Amycolatopsis marina

aerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Amycolatopsis

Description

Amycolatopsis marina is a Gram-positive bacterium that demonstrates aerobic metabolism and thrives optimally at a temperature of 29.0°C. This microbial species belongs to the genus Amycolatopsis, which is known for its ability to produce various bioactive compounds. As a member of the Actinobacteria phylum, A. marina exhibits the characteristic high G+C content in its DNA, which is a hallmark of many actinobacteria and is often associated with their complex secondary metabolite production. The aerobic nature of A. marina indicates that it relies on oxygen for its growth and metabolic processes, which may influence its ecological niches and interactions with other microorganisms in its environment. Given its optimal growth temperature, A. marina may be well-suited to marine or estuarine environments where temperatures are moderate and the presence of oxygen is abundant. Furthermore, the ability of A. marina to thrive in oxygen-rich conditions suggests potential roles in biogeochemical cycles, particularly in nutrient cycling within aquatic ecosystems. The ecological implications of its metabolic activities could contribute to the breakdown of organic matter or the production of compounds that influence microbial community dynamics in marine habitats, highlighting the importance of this bacterium in maintaining ecological balance.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusAmycolatopsis
SpeciesAmycolatopsis marina
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
ShapeNot Available
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Amycolatopsis marina strain CGMCC 4.3568 genome assembly, contig:

Gene Summary

Adenine Count

1120190 bp

Thymine Count

1110911 bp

Guanine Count

2383839 bp

Cytosine Count

2405654 bp

Genome Length

7020699 bp

Protein-coding Genes

6665 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase/4-guanidinobutyraldehyde dehydrogenase / nad-dependent aldehyde dehydrogenaseSAMN05216266_104189Not AvailableNegative1843894 - 184539653403.2
l-alanine-dl-glutamate epimeraseSAMN05216266_104190Not AvailableNegative1845393 - 184650241305.5
5,6,7,8-tetrahydromethanopterin hydro-lyaseSAMN05216266_104191Not AvailableNegative1846505 - 184700817484.6
osmoprotectant transport system substrate-binding proteinSAMN05216266_104192Not AvailableNegative1847005 - 184794033382.9
osmoprotectant transport system permease proteinSAMN05216266_104193Not AvailableNegative1847970 - 184874927146.3
osmoprotectant transport system atp-binding proteinSAMN05216266_104194Not AvailableNegative1848739 - 184966533770.9
osmoprotectant transport system permease proteinSAMN05216266_104195Not AvailableNegative1849802 - 185044922622.4
transcriptional regulator, iclr familySAMN05216266_104196Not AvailablePositive1850643 - 185132924464.2
Trna-thrNot AvailableNot AvailablePositive1851420 - 1851495Not Available
uncharacterized membrane protein yjjp, duf1212 familySAMN05216266_104198Not AvailablePositive1851767 - 185328453110.8

Displaying genes 1811 – 1820 of 1830 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.