Hydrocarboniphaga daqingensis

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Nevskiales

Family

Nevskiaceae

Genus

Hydrocarboniphaga

Description

Hydrocarboniphaga daqingensis is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This microbe thrives optimally at a temperature of 25.0°C, suggesting a preference for moderate environmental conditions. Its Gram-negative cell wall structure indicates the presence of an outer membrane, which may confer specific advantages in its ecological niche, such as resistance to certain antibiotics or environmental stresses. As an aerobic organism, Hydrocarboniphaga daqingensis requires oxygen for growth and energy production, positioning it as a potential player in biogeochemical cycles, particularly in environments enriched with hydrocarbons. This trait may enable it to contribute to the degradation of hydrocarbon pollutants, making it of interest for bioremediation applications. The ecological role of Hydrocarboniphaga daqingensis could be significant in environments such as oil-contaminated sites, where its metabolic capabilities might facilitate the breakdown of complex hydrocarbon compounds, thereby aiding in the restoration of affected ecosystems. Further investigation into its metabolic pathways and interactions with other microbial communities could reveal additional insights into its functional contributions within such biogeochemical contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderNevskiales
FamilyNevskiaceae
GenusHydrocarboniphaga
SpeciesHydrocarboniphaga daqingensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hydrocarboniphaga daqingensis strain CGMCC 1.7049 genome assembly,

Gene Summary

Adenine Count

651164 bp

Thymine Count

664854 bp

Guanine Count

1244492 bp

Cytosine Count

1235012 bp

Genome Length

3800678 bp

Protein-coding Genes

3256 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
outer membrane protein ompaSAMN04488068_0893Not AvailablePositive917320 - 91858544945.9
trna nucleotidyltransferase (cca-adding enzyme)SAMN04488068_0894Not AvailableNegative918664 - 91991146592.8
soluble lytic murein transglycosylaseSAMN04488068_0895Not AvailableNegative919908 - 92196275020.4
putative peptidoglycan binding domain-containing proteinSAMN04488068_0896Not AvailablePositive922085 - 92341948711.0
uncharacterized conserved protein, duf1499 familySAMN04488068_0897Not AvailableNegative923441 - 92386915555.7
lysr family transcriptional regulator, hydrogen peroxide-inducible genes activatorSAMN04488068_0898Not AvailableNegative923895 - 92483334849.4
coproporphyrinogen oxidaseSAMN04488068_0899Not AvailableNegative924841 - 92575234052.2
translation factor sua5SAMN04488068_0900Not AvailableNegative925769 - 92635321280.7
dna topoisomerase-1SAMN04488068_0901Not AvailableNegative926357 - 92886192180.4
hypothetical proteinSAMN04488068_0902Not AvailableNegative929060 - 93031941527.1

Displaying genes 821 – 830 of 3310 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.