Desulfohalobium retbaense DSM 5692

Gram-negativeBacilliNon-motileAnaerobic

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfohalobiaceae

Genus

Desulfohalobium

Description

Desulfohalobium retbaense (strain DSM 5692) is an anaerobic, moderately halophilic sulfate-reducing Gram-negative bacterium isolated from sediment of the pink hypersaline Lake Retba in Senegal, Africa. This organism incompletely oxidizes ethanol, pyruvate, and lactate to acetate and CO(2). Sulfate, sulfite, thiosulfate, and elemental sulfur are used as electron acceptors and reduced to H2S. Growth occurs at pH values ranging from 5.5 to 8.0, with an optimum pH between 6.5-7.0. The optimum temperature for growth is between 37 to 4O degrees Celsius, and 45 degrees Celsius is the upper temperature limit for growth. NaCl and MgCl(2), are required for growth, with an optimum NaCl concentration near 10%. (Adaptated from: http://ijs.sgmjournals.org/cgi/reprint/41/1/74.pdf). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfohalobiaceae
GenusDesulfohalobium
SpeciesDesulfohalobium retbaense
StrainDSM 5692

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Desulfohalobium retbaense DSM 5692
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature37
Temperature rangeMesophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Desulfohalobium retbaense DSM 5692, complete sequence.

Gene Summary

Adenine Count

609005 bp

Thymine Count

607177 bp

Guanine Count

823732 bp

Cytosine Count

824390 bp

Genome Length

2864304 bp

Protein-coding Genes

2437 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
holliday junction branch migration protein ruvaDRET_RS08750Not AvailableNegative2009446 - 201006021811.1
crossover junction endodeoxyribonuclease ruvcDRET_RS08755Not AvailableNegative2010136 - 201065117976.8
yebc/pmpr family dna-binding transcriptional regulatorDRET_RS08760Not AvailableNegative2010667 - 201141627178.9
rlme family rna methyltransferaseDRET_RS08765Not AvailableNegative2011571 - 201217022199.8
Trna-alaNot AvailableNot AvailablePositive2012324 - 2012399Not Available
transketolaseDRET_RS08775Not AvailableNegative2012483 - 201484384045.6
trab/gumn family proteinDRET_RS08780Not AvailablePositive2015257 - 201643542828.4
dead/deah box helicaseDRET_RS08785Not AvailablePositive2016677 - 201817054955.7
rna recognition motif domain-containing proteinDRET_RS08790Not AvailablePositive2018601 - 20188649771.35
hypothetical proteinDRET_RS08795Not AvailablePositive2019122 - 201941811467.5

Displaying genes 1741 – 1750 of 2547 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.