Paenibacillus taichungensis str. DB-4

rodfacultative aerobe/anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus taichungensis strain DB-4 is a rod-shaped, spore-forming bacterium that exhibits both Gram-positive and Gram-negative characteristics. This microbe demonstrates a facultative metabolism, allowing it to thrive in both aerobic and anaerobic environments. The optimal growth temperature for P. taichungensis DB-4 is around 29.0°C, which suggests a preference for moderately warm conditions that may be encountered in various ecological niches. As a member of the Paenibacillus genus, this strain is likely to possess a range of metabolic capabilities, although specific metabolic pathways are not detailed here. Its ability to form spores indicates a resilience to environmental stressors, enabling survival in fluctuating conditions that may be inhospitable for other bacteria. This trait is particularly valuable in natural ecosystems where competition and environmental shifts are prevalent. The facultative anaerobic nature of P. taichungensis DB-4 suggests potential versatility in its ecological roles, allowing it to adapt to varying oxygen levels. This adaptability may facilitate its presence in diverse habitats, including soil and sediment, where it could play a role in nutrient cycling and organic matter decomposition. Further research into the specific interactions and contributions of P. taichungensis DB-4 within its environment could provide insights into its ecological significance and potential applications in biotechnology.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus taichungensis
StrainDB-4

Profile

Physiology
Gram staining propertiesGram-negative / gram-positive
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe
Optimal temperature29
Temperature rangemesophilic
Habitatsurface of three different kinds of seaweeds
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationspore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus taichungensis strain DB-4 Ga0222418_129, whole

Gene Summary

Adenine Count

1901539 bp

Thymine Count

1905798 bp

Guanine Count

1637322 bp

Cytosine Count

1638793 bp

Genome Length

7083592 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aminobenzoyl-glutamate utilization protein bDEU73_103517Not AvailablePositive2419466 - 242090851949.4
l-serine ammonia-lyaseDEU73_103518Not AvailablePositive2420850 - 242158126363.0
l-serine dehydrataseDEU73_103519Not AvailablePositive2421650 - 242252530336.5
hypothetical proteinDEU73_103520Not AvailableNegative2422604 - 242325124510.9
hypothetical proteinDEU73_103521Not AvailableNegative2423715 - 242406213409.2
phosphotransferase family enzymeDEU73_103522Not AvailableNegative2424119 - 242498233119.8
putative damage-inducible protein dinbDEU73_103523Not AvailableNegative2425040 - 242552218866.4
acetyltransferase (gnat) family proteinDEU73_103524Not AvailableNegative2425727 - 242627821531.4
hypothetical proteinDEU73_103525Not AvailableNegative2426361 - 242664511138.8
nicotinamidase-related amidaseDEU73_103526Not AvailableNegative2426652 - 242717919143.8

Displaying genes 2331 – 2340 of 6453 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

188 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da

Displaying 1–10 of 188 metabolites

Health Effects

No health effects information available for this bacterium.