Agrobacterium sp. LY4

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium sp. LY4
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium sp. LY4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium sp. LY4 contig9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1140381 bp

Thymine Count

1126363 bp

Guanine Count

1677813 bp

Cytosine Count

1697653 bp

Genome Length

5642210 bp

Protein-coding Genes

5200 genes

Non-Coding Genes

173 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad(p)h quinone oxidoreductaseL904_04020Not AvailableNegative806585 - 80759835671.3
diguanylate cyclaseL904_04025Not AvailableNegative807687 - 80948966936.3
hypothetical proteinL904_04030Not AvailableNegative809672 - 8098636723.86
hypothetical proteinL904_04035Not AvailableNegative810149 - 81069719055.3
transcriptional regulatorL904_04040Not AvailablePositive810918 - 81153822841.7
4-trimethylaminobutyraldehyde dehydrogenaseL904_04045Not AvailablePositive811551 - 81302352077.1
choline dehydrogenaseL904_04050Not AvailablePositive813254 - 81490360610.5
plasmid stabilization proteinL904_04055Not AvailableNegative814907 - 81520611300.3
prevent-host-death proteinL904_04060Not AvailableNegative815203 - 81547510084.1
chloride channel proteinL904_04065Not AvailablePositive815627 - 81697046459.6

Displaying genes 1001 – 1010 of 5373 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.