Bradyrhizobium japonicum SEMIA 5079

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Bradyrhizobium

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusBradyrhizobium
SpeciesBradyrhizobium japonicum
StrainSEMIA 5079

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Bradyrhizobium japonicum SEMIA 5079
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Glycine max
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bradyrhizobium japonicum SEMIA 5079 chromosome.

Gene Summary

Adenine Count

1757752 bp

Thymine Count

1735470 bp

Guanine Count

3035324 bp

Cytosine Count

3053570 bp

Genome Length

9583027 bp

Protein-coding Genes

9074 genes

Non-Coding Genes

83 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter permeaseBJS_RS08740Not AvailablePositive1864594 - 186551733316.1
abc transporter permeaseBJS_RS08745Not AvailablePositive1865514 - 186633529121.9
abc transporter atp-binding proteinBJS_RS08750Not AvailablePositive1866332 - 186731235376.1
abc transporter atp-binding proteinBJS_RS08755Not AvailablePositive1867305 - 186835738532.3
hypothetical proteinBJS_RS08760Not AvailablePositive1868565 - 18687837863.37
isoprenylcysteine carboxylmethyltransferase family proteinBJS_RS08765Not AvailableNegative1869687 - 18699057542.04
adenylate/guanylate cyclase domain-containing proteinBJS_RS08770Not AvailableNegative1870172 - 187191463768.8
c13 family peptidaseBJS_RS08775Not AvailablePositive1872290 - 187303626693.3
hypothetical proteinBJS_RS08780Not AvailablePositive1873630 - 187398610772.3
cyclase family proteinBJS_RS45760Not AvailablePositive1874212 - 187488324977.9

Displaying genes 1851 – 1860 of 9157 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

19 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002147N-ethylsuccinimideC6H9NO2Chemical structure of N-ethylsuccinimide2314-78-5
Average127.1412Da
Monoisotopic127.0633285Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003657N-acetyl-D-muramate 6-phosphateC11H17NO11PChemical structure of N-acetyl-D-muramate 6-phosphateNot available
Average370.228Da
Monoisotopic370.0555681Da

Displaying 1–10 of 19 metabolites

Health Effects

No health effects information available for this bacterium.