Bradyrhizobium japonicum SEMIA 5079

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Bradyrhizobium

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusBradyrhizobium
SpeciesBradyrhizobium japonicum
StrainSEMIA 5079

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Bradyrhizobium japonicum SEMIA 5079
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Glycine max
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bradyrhizobium japonicum SEMIA 5079 chromosome.

Gene Summary

Adenine Count

1757752 bp

Thymine Count

1735470 bp

Guanine Count

3035324 bp

Cytosine Count

3053570 bp

Genome Length

9583027 bp

Protein-coding Genes

9074 genes

Non-Coding Genes

83 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf983 domain-containing proteinBJS_RS07810Not AvailableNegative1676372 - 167681216230.9
ribonuclease rBJS_RS07815Not AvailableNegative1676806 - 167916386174.2
type i dna topoisomeraseBJS_RS07820Not AvailableNegative1679183 - 168193099971.0
hypothetical proteinBJS_RS07825Not AvailablePositive1682158 - 16823978548.38
flavodoxin family proteinBJS_RS07830Not AvailableNegative1682635 - 168318919570.2
helix-turn-helix domain-containing proteinBJS_RS07835Not AvailableNegative1683297 - 168376417478.2
glucose 1-dehydrogenaseBJS_RS07840Not AvailablePositive1683886 - 168465926195.7
hypothetical proteinBJS_RS07845Not AvailablePositive1684835 - 16850176394.82
fmn-dependent nadh-azoreductaseBJS_RS07850Not AvailableNegative1685076 - 168568421162.5
winged helix-turn-helix transcriptional regulatorBJS_RS07855Not AvailablePositive1685769 - 168617915425.7

Displaying genes 1661 – 1670 of 9157 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

19 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002147N-ethylsuccinimideC6H9NO2Chemical structure of N-ethylsuccinimide2314-78-5
Average127.1412Da
Monoisotopic127.0633285Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003657N-acetyl-D-muramate 6-phosphateC11H17NO11PChemical structure of N-acetyl-D-muramate 6-phosphateNot available
Average370.228Da
Monoisotopic370.0555681Da

Displaying 1–10 of 19 metabolites

Health Effects

No health effects information available for this bacterium.