Pedobacter nyackensis

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter nyackensis is a Gram-negative, rod-shaped bacterium that exhibits aerobic respiration and is non-spore-forming. Its optimal growth temperature is around 16.0 °C, indicating a preference for cooler environments, which may reflect its adaptation to specific ecological niches. As a member of the genus Pedobacter, this microbe is likely to possess traits that confer resilience in various habitats, potentially including soil and freshwater environments. The Gram-negative nature of Pedobacter nyackensis suggests that it possesses a complex cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which can influence its interactions with the surrounding environment. The aerobic requirement indicates that Pedobacter nyackensis relies on oxygen for its metabolic processes, which may position it within ecosystems where oxygen availability is sufficient, such as in well-aerated soils or water bodies. The absence of sporulation suggests that this bacterium may be less resilient to extreme conditions compared to spore-forming bacteria, potentially limiting its survival during environmental disturbances. Overall, the traits of Pedobacter nyackensis underscore its role in environments where cooler temperatures prevail and oxygen is accessible, highlighting its potential contributions to nutrient cycling and microbial diversity in these ecosystems. Further research could elucidate its specific interactions within these microbial communities and its broader ecological functions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter nyackensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter nyackensis
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter nyackensis strain DSM 19625 genome assembly, contig:

Gene Summary

Adenine Count

1845598 bp

Thymine Count

1830306 bp

Guanine Count

1224599 bp

Cytosine Count

1175798 bp

Genome Length

6077111 bp

Protein-coding Genes

4968 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nucleotidyl transferaseSAMN04488101_10262Not AvailablePositive1087256 - 108815533933.3
molecular chaperone dnakSAMN04488101_10263Not AvailableNegative1088230 - 109014668681.2
methyltransferase domain-containing proteinSAMN04488101_10264Not AvailableNegative1090316 - 109152745990.9
2'-5' rna ligaseSAMN04488101_10265Not AvailablePositive1091583 - 109213721665.1
large subunit ribosomal protein l17SAMN04488101_10266Not AvailableNegative1092197 - 109271819312.1
dna-directed rna polymerase subunit alphaSAMN04488101_10267Not AvailableNegative1092811 - 109380337228.9
small subunit ribosomal protein s4SAMN04488101_10268Not AvailableNegative1093881 - 109448922943.6
ssu ribosomal protein s11pSAMN04488101_10269Not AvailableNegative1094555 - 109494413788.8
ssu ribosomal protein s13pSAMN04488101_10270Not AvailableNegative1094966 - 109534314072.2
translation initiation factor if-1SAMN04488101_10271Not AvailableNegative1095546 - 10957648308.24

Displaying genes 941 – 950 of 5031 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.