Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_1293 | Not Available | Negative | 6062665 - 6063150 | 18222.1 |
| sulfate permease, sulp family | SAMN04488101_1294 | Not Available | Negative | 6063326 - 6064855 | 54673.8 |
| chad domain-containing protein | SAMN04488101_1295 | Not Available | Negative | 6064932 - 6065711 | 30230.6 |
| n-terminal domain of peptidase_s41 | SAMN04488101_1296 | Not Available | Negative | 6065794 - 6067125 | 49394.0 |
| cubico group peptidase, beta-lactamase class c family | SAMN04488101_1297 | Not Available | Negative | 6067133 - 6068440 | 48045.8 |
| two component transcriptional regulator, lyttr family | SAMN04488101_1298 | Not Available | Positive | 6068723 - 6069433 | 27658.2 |
| Trna-ser | Not Available | Not Available | Positive | 6069652 - 6069741 | Not Available |
| orf6n domain-containing protein | SAMN04488101_12910 | Not Available | Positive | 6070141 - 6070593 | 17714.7 |
| hypothetical protein | SAMN04488101_12911 | Not Available | Positive | 6070813 - 6071268 | 17629.3 |
| protein n-acetyltransferase, rimj/riml family | SAMN04488101_1323 | Not Available | Positive | 6075163 - 6075735 | 22301.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
