Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| radical sam superfamily enzyme ygiq, upf0313 family | SAMN04488101_1264 | Not Available | Positive | 5992061 - 5994289 | 85005.1 |
| hypothetical protein | SAMN04488101_1265 | Not Available | Negative | 5994370 - 5994621 | 9167.87 |
| dihydrofolate reductase | SAMN04488101_1266 | Not Available | Negative | 5994819 - 5995388 | 20838.2 |
| transposase | SAMN04488101_1267 | Not Available | Negative | 5995745 - 5996245 | 19432.1 |
| transposase | SAMN04488101_1268 | Not Available | Negative | 5996258 - 5996590 | 12264.1 |
| hypothetical protein | SAMN04488101_1269 | Not Available | Negative | 5996709 - 5997074 | 14307.2 |
| Trna-lys | Not Available | Not Available | Positive | 5997239 - 5997314 | Not Available |
| predicted phospholipase, patatin/cpla2 family | SAMN04488101_12611 | Not Available | Negative | 5997470 - 5998357 | 33067.3 |
| protein of unknown function | SAMN04488101_12612 | Not Available | Positive | 5998594 - 5999454 | 32246.7 |
| uncharacterized conserved protein yeao, duf488 family | SAMN04488101_12613 | Not Available | Negative | 5999451 - 5999810 | 13974.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
