Pedobacter nyackensis

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter nyackensis is a Gram-negative, rod-shaped bacterium that exhibits aerobic respiration and is non-spore-forming. Its optimal growth temperature is around 16.0 °C, indicating a preference for cooler environments, which may reflect its adaptation to specific ecological niches. As a member of the genus Pedobacter, this microbe is likely to possess traits that confer resilience in various habitats, potentially including soil and freshwater environments. The Gram-negative nature of Pedobacter nyackensis suggests that it possesses a complex cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which can influence its interactions with the surrounding environment. The aerobic requirement indicates that Pedobacter nyackensis relies on oxygen for its metabolic processes, which may position it within ecosystems where oxygen availability is sufficient, such as in well-aerated soils or water bodies. The absence of sporulation suggests that this bacterium may be less resilient to extreme conditions compared to spore-forming bacteria, potentially limiting its survival during environmental disturbances. Overall, the traits of Pedobacter nyackensis underscore its role in environments where cooler temperatures prevail and oxygen is accessible, highlighting its potential contributions to nutrient cycling and microbial diversity in these ecosystems. Further research could elucidate its specific interactions within these microbial communities and its broader ecological functions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter nyackensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter nyackensis
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter nyackensis strain DSM 19625 genome assembly, contig:

Gene Summary

Adenine Count

1845598 bp

Thymine Count

1830306 bp

Guanine Count

1224599 bp

Cytosine Count

1175798 bp

Genome Length

6077111 bp

Protein-coding Genes

4968 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
two-component system, ompr family, alkaline phosphatase synthesis response regulator phopSAMN04488101_1154Not AvailablePositive4972715 - 497340426059.9
23s rrna pseudouridine955/2504/2580 synthaseSAMN04488101_1155Not AvailablePositive4973435 - 497415727487.3
chloride channel protein, cic familySAMN04488101_1156Not AvailablePositive4974171 - 497595565342.0
rna polymerase sigma-70 factor, ecf subfamilySAMN04488101_1157Not AvailablePositive4976106 - 497672324250.5
fecr family proteinSAMN04488101_1158Not AvailablePositive4976753 - 497791343881.4
tonb-linked outer membrane protein, susc/raga familySAMN04488101_1159Not AvailablePositive4978102 - 4981488124788.0
starch-binding associating with outer membraneSAMN04488101_11510Not AvailablePositive4981495 - 498338770750.9
protein of unknown functionSAMN04488101_11511Not AvailablePositive4983424 - 498438935756.8
dna-binding transcriptional response regulator, ntrc family, contains rec, aaa-type atpase, and a fis-type dna-binding domainsSAMN04488101_11512Not AvailableNegative4984473 - 498587952400.8
hypothetical proteinSAMN04488101_11514Not AvailablePositive4986444 - 498675211079.1

Displaying genes 4101 – 4110 of 5031 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.