Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-directed rna polymerase subunit beta | SAMN04488101_11141 | Not Available | Positive | 4331042 - 4334845 | 142295.0 |
| dna-directed rna polymerase subunit beta' | SAMN04488101_11142 | Not Available | Positive | 4334922 - 4339208 | 159829.0 |
| protein of unknown function | SAMN04488101_11143 | Not Available | Positive | 4339302 - 4339616 | 11577.8 |
| trna dimethylallyltransferase | SAMN04488101_11144 | Not Available | Negative | 4339613 - 4340521 | 34149.9 |
| pria4b orf-3-like protein | SAMN04488101_11145 | Not Available | Negative | 4340531 - 4341175 | 25025.5 |
| hdig domain-containing protein | SAMN04488101_11146 | Not Available | Negative | 4341233 - 4342639 | 53614.1 |
| l-threonylcarbamoyladenylate synthase | SAMN04488101_11147 | Not Available | Negative | 4342666 - 4343232 | 20892.2 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488101_11148 | Not Available | Negative | 4343213 - 4344364 | 43747.4 |
| 2,3,4,5-tetrahydropyridine-2-carboxylate n-succinyltransferase | SAMN04488101_11149 | Not Available | Negative | 4344376 - 4345194 | 29643.2 |
| heat shock protein hsp15 | SAMN04488101_11150 | Not Available | Positive | 4345311 - 4345709 | 15186.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
