Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN04488101_110145 | Not Available | Positive | 4275026 - 4279159 | 155555.0 |
| hypothetical protein | SAMN04488101_110146 | Not Available | Positive | 4279283 - 4281742 | 93591.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_110147 | Not Available | Positive | 4281779 - 4284844 | 112688.0 |
| starch-binding associating with outer membrane | SAMN04488101_110148 | Not Available | Positive | 4284867 - 4286354 | 55266.4 |
| predicted glycosyl hydrolase, gh43/duf377 family | SAMN04488101_110149 | Not Available | Positive | 4286372 - 4287424 | 38818.2 |
| mfs transporter, yqge family, putative transporter | SAMN04488101_110150 | Not Available | Positive | 4287421 - 4288716 | 48002.5 |
| hypothetical protein | SAMN04488101_110151 | Not Available | Positive | 4288768 - 4290495 | 64328.6 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN04488101_110152 | Not Available | Positive | 4290616 - 4291575 | 36774.4 |
| type ix secretion system membrane protein, porp/sprf family | SAMN04488101_110153 | Not Available | Negative | 4291632 - 4292519 | 32183.3 |
| gliding motility-associated c-terminal domain-containing protein | SAMN04488101_110154 | Not Available | Negative | 4292618 - 4295290 | 90980.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
