Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-l-fucosidase | SAMN04488101_110135 | Not Available | Positive | 4260421 - 4261746 | 50227.1 |
| 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) | SAMN04488101_110136 | Not Available | Positive | 4261762 - 4262619 | 31165.9 |
| l-fuconolactonase | SAMN04488101_110137 | Not Available | Positive | 4262606 - 4263439 | 31738.6 |
| 3-oxoacyl-[acyl-carrier protein] reductase | SAMN04488101_110138 | Not Available | Positive | 4263451 - 4264239 | 27896.4 |
| xaa-pro aminopeptidase | SAMN04488101_110139 | Not Available | Negative | 4264410 - 4266185 | 66133.7 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_110140 | Not Available | Positive | 4266376 - 4266957 | 22290.1 |
| fecr family protein | SAMN04488101_110141 | Not Available | Positive | 4267044 - 4268042 | 37161.5 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_110142 | Not Available | Positive | 4268274 - 4271513 | 117595.0 |
| susd family protein | SAMN04488101_110143 | Not Available | Positive | 4271526 - 4272971 | 53579.1 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488101_110144 | Not Available | Positive | 4272983 - 4274893 | 71445.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
