Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gtp-binding protein | SAMN04488101_110105 | Not Available | Positive | 4228016 - 4229818 | 67003.1 |
| 23s rrna u2552 (ribose-2'-o)-methylase rlme/ftsj | SAMN04488101_110106 | Not Available | Positive | 4230002 - 4230781 | 30546.8 |
| membrane protein involved in the export of o-antigen and teichoic acid | SAMN04488101_110107 | Not Available | Negative | 4230784 - 4232271 | 56291.7 |
| glycosyltransferase, gt2 family | SAMN04488101_110108 | Not Available | Positive | 4232331 - 4233353 | 39457.6 |
| glycosyl transferase family 2 | SAMN04488101_110109 | Not Available | Positive | 4233418 - 4234335 | 35510.3 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488101_110110 | Not Available | Positive | 4234355 - 4235626 | 47549.2 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488101_110111 | Not Available | Positive | 4235643 - 4236392 | 28675.1 |
| peptidoglycan/lps o-acetylase oafa/yrhl, contains acyltransferase and sgnh-hydrolase domains | SAMN04488101_110112 | Not Available | Positive | 4236397 - 4237506 | 41270.5 |
| putative hydrolase of the had superfamily | SAMN04488101_110113 | Not Available | Negative | 4237475 - 4238164 | 26906.0 |
| uracil phosphoribosyltransferase | SAMN04488101_110114 | Not Available | Negative | 4238213 - 4238887 | 25074.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
