Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN04488101_11034 | Not Available | Positive | 4147088 - 4147858 | 26901.0 |
| n-acetylmuramoyl-l-alanine amidase | SAMN04488101_11035 | Not Available | Positive | 4147963 - 4148646 | 25908.7 |
| hypothetical protein | SAMN04488101_11036 | Not Available | Positive | 4148683 - 4148898 | 8271.0 |
| c-terminal processing peptidase-3. serine peptidase. merops family s41a | SAMN04488101_11037 | Not Available | Positive | 4148974 - 4150680 | 62753.5 |
| ferredoxin, 2fe-2s | SAMN04488101_11038 | Not Available | Negative | 4150693 - 4151022 | 11918.2 |
| thioredoxin reductase (nadph) | SAMN04488101_11039 | Not Available | Negative | 4151025 - 4152035 | 36771.4 |
| udp-2,3-diacylglucosamine hydrolase | SAMN04488101_11040 | Not Available | Positive | 4152164 - 4152910 | 29073.7 |
| peptide chain release factor 1 | SAMN04488101_11041 | Not Available | Positive | 4153080 - 4154153 | 40227.0 |
| Trna-asp | Not Available | Not Available | Positive | 4154247 - 4154323 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 4154396 - 4154469 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
