Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dinb superfamily protein | SAMN04488101_109104 | Not Available | Positive | 3990310 - 3990780 | 17421.8 |
| pdz domain-containing protein | SAMN04488101_109105 | Not Available | Positive | 3990899 - 3993196 | 86412.5 |
| thioredoxin reductase | SAMN04488101_109106 | Not Available | Positive | 3993344 - 3994255 | 32860.9 |
| transcriptional regulator, iclr family | SAMN04488101_109107 | Not Available | Negative | 3994380 - 3995153 | 28386.4 |
| alpha-l-rhamnosidase n-terminal domain-containing protein | SAMN04488101_109108 | Not Available | Positive | 3995368 - 3998136 | 103508.0 |
| hypothetical protein | SAMN04488101_109109 | Not Available | Positive | 3998145 - 3999260 | 43118.3 |
| beta-galactosidase | SAMN04488101_109110 | Not Available | Positive | 3999276 - 4001687 | 90888.5 |
| carbohydrate abc transporter substrate-binding protein, cut1 family | SAMN04488101_109111 | Not Available | Positive | 4001727 - 4002887 | 43466.2 |
| crotonobetainyl-coa:carnitine coa-transferase caib | SAMN04488101_109112 | Not Available | Positive | 4002884 - 4004035 | 42086.8 |
| crotonobetainyl-coa:carnitine coa-transferase caib | SAMN04488101_109113 | Not Available | Positive | 4004039 - 4005199 | 42282.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
