Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN04488101_10984 | Not Available | Positive | 3953874 - 3954548 | 25337.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_10985 | Not Available | Positive | 3954851 - 3957985 | 114268.0 |
| starch-binding associating with outer membrane | SAMN04488101_10986 | Not Available | Positive | 3957997 - 3959862 | 69502.0 |
| hypothetical protein | SAMN04488101_10987 | Not Available | Positive | 3959888 - 3960859 | 35558.2 |
| hypothetical protein | SAMN04488101_10988 | Not Available | Positive | 3961286 - 3962941 | 60751.5 |
| hypothetical protein | SAMN04488101_10989 | Not Available | Positive | 3962946 - 3964574 | 59151.4 |
| hypothetical protein | SAMN04488101_10990 | Not Available | Positive | 3964634 - 3967819 | 117203.0 |
| putative collagen-binding domain of a collagenase | SAMN04488101_10991 | Not Available | Positive | 3967832 - 3969280 | 54440.7 |
| glycosyl hydrolases family 43 | SAMN04488101_10992 | Not Available | Positive | 3969280 - 3970206 | 35243.4 |
| bnr repeat-like domain-containing protein | SAMN04488101_10993 | Not Available | Positive | 3970249 - 3972096 | 69470.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
