Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_1094 | Not Available | Positive | 3848155 - 3848733 | 22507.2 |
| fecr family protein | SAMN04488101_1095 | Not Available | Positive | 3848815 - 3849933 | 41059.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_1096 | Not Available | Positive | 3850053 - 3853508 | 128583.0 |
| susd family protein | SAMN04488101_1097 | Not Available | Positive | 3853569 - 3855017 | 54777.3 |
| thioredoxin-like | SAMN04488101_1098 | Not Available | Positive | 3855091 - 3856290 | 44488.3 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488101_1099 | Not Available | Positive | 3856283 - 3857485 | 45868.3 |
| polyketide cyclase / dehydrase and lipid transport | SAMN04488101_10910 | Not Available | Positive | 3857547 - 3858095 | 20126.3 |
| predicted zn-dependent peptidase | SAMN04488101_10911 | Not Available | Positive | 3858133 - 3861081 | 111430.0 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488101_10912 | Not Available | Positive | 3861214 - 3862374 | 44241.7 |
| uncharacterized conserved protein yndb, ahsa1/start domain | SAMN04488101_10913 | Not Available | Positive | 3862581 - 3863033 | 16852.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
