Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyribonucleotide nucleotidyltransferase | SAMN04488101_108127 | Not Available | Negative | 3722374 - 3724518 | 77652.6 |
| small subunit ribosomal protein s15 | SAMN04488101_108128 | Not Available | Negative | 3724670 - 3724972 | 11436.0 |
| thioesterase-3 | SAMN04488101_108129 | Not Available | Positive | 3725143 - 3725562 | 16184.6 |
| putative efflux protein, mate family | SAMN04488101_108130 | Not Available | Positive | 3725603 - 3727006 | 50540.7 |
| hypothetical protein | SAMN04488101_108131 | Not Available | Negative | 3727003 - 3727404 | 15246.9 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN04488101_108132 | Not Available | Negative | 3727473 - 3728060 | 22588.9 |
| protein of unknown function | SAMN04488101_108133 | Not Available | Positive | 3728179 - 3728967 | 29046.6 |
| d-alanine-d-alanine ligase | SAMN04488101_108134 | Not Available | Negative | 3729033 - 3730019 | 36376.6 |
| pasta domain, binds beta-lactams | SAMN04488101_108135 | Not Available | Positive | 3730225 - 3730989 | 27558.4 |
| upf0755 protein | SAMN04488101_108136 | Not Available | Positive | 3731005 - 3732057 | 39952.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
