Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homoserine dehydrogenase | SAMN04488101_108107 | Not Available | Positive | 3700918 - 3702159 | 46754.8 |
| 2-oxoglutarate dehydrogenase e2 component (dihydrolipoamide succinyltransferase) | SAMN04488101_108108 | Not Available | Negative | 3702222 - 3703550 | 47718.7 |
| nicotinamide-nucleotide amidase | SAMN04488101_108109 | Not Available | Negative | 3703601 - 3704848 | 45341.3 |
| hypothetical protein | SAMN04488101_108110 | Not Available | Negative | 3704862 - 3707555 | 100350.0 |
| n-acetylmuramoyl-l-alanine amidase | SAMN04488101_108111 | Not Available | Positive | 3707612 - 3708490 | 32693.6 |
| n-acetylmuramoyl-l-alanine amidase | SAMN04488101_108112 | Not Available | Positive | 3708546 - 3709385 | 31509.6 |
| phospholipid/cholesterol/gamma-hch transport system substrate-binding protein | SAMN04488101_108113 | Not Available | Positive | 3709408 - 3710361 | 34007.1 |
| ribonuclease z | SAMN04488101_108114 | Not Available | Negative | 3710450 - 3711361 | 34852.0 |
| anti-anti-sigma factor | SAMN04488101_108115 | Not Available | Negative | 3711361 - 3711747 | 14158.2 |
| phosphoribosylaminoimidazole-succinocarboxamide synthase | SAMN04488101_108116 | Not Available | Negative | 3711876 - 3712820 | 35525.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
