Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5-(carboxyamino)imidazole ribonucleotide mutase | SAMN04488101_10886 | Not Available | Positive | 3681985 - 3682467 | 16830.5 |
| putative transcriptional regulator | SAMN04488101_10887 | Not Available | Negative | 3682470 - 3683033 | 21384.6 |
| pyridoxamine 5'-phosphate oxidase | SAMN04488101_10888 | Not Available | Positive | 3683083 - 3683733 | 24794.2 |
| 3-hydroxybutyryl-coa dehydrogenase | SAMN04488101_10889 | Not Available | Positive | 3683767 - 3684654 | 31785.0 |
| holliday junction dna helicase subunit ruvb | SAMN04488101_10890 | Not Available | Positive | 3684696 - 3685718 | 37588.2 |
| predicted amidohydrolase | SAMN04488101_10891 | Not Available | Positive | 3685844 - 3687349 | 57696.7 |
| hypothetical protein | SAMN04488101_10892 | Not Available | Negative | 3687351 - 3687566 | 8317.98 |
| epoxyqueuosine reductase | SAMN04488101_10893 | Not Available | Positive | 3687646 - 3688584 | 35864.1 |
| dna polymerase-3 subunit epsilon | SAMN04488101_10894 | Not Available | Negative | 3688609 - 3689586 | 37559.0 |
| hypothetical protein | SAMN04488101_10895 | Not Available | Negative | 3689707 - 3689829 | 4575.91 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
