Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tat (twin-arginine translocation) pathway signal sequence | SAMN04488101_10814 | Not Available | Negative | 3599212 - 3600732 | 56576.4 |
| planctomycete cytochrome c | SAMN04488101_10815 | Not Available | Negative | 3600737 - 3603964 | 122224.0 |
| hypothetical protein | SAMN04488101_10816 | Not Available | Positive | 3604343 - 3605056 | 27601.3 |
| metal binding domain of ada | SAMN04488101_10817 | Not Available | Positive | 3605060 - 3605320 | 10069.3 |
| hemoglobin | SAMN04488101_10818 | Not Available | Positive | 3605401 - 3605799 | 14672.8 |
| methyltransferase domain-containing protein | SAMN04488101_10819 | Not Available | Negative | 3605964 - 3606572 | 22778.9 |
| hypothetical protein | SAMN04488101_10820 | Not Available | Positive | 3606881 - 3607282 | 15818.1 |
| pp_02977 | SAMN04488101_10821 | Not Available | Positive | 3607586 - 3608986 | Not Available |
| peptide chain release factor | SAMN04488101_10822 | Not Available | Positive | 3608998 - 3609606 | 22650.6 |
| putative dna-binding domain-containing protein | SAMN04488101_10823 | Not Available | Positive | 3609806 - 3610033 | 8134.65 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
