Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mraz protein | SAMN04488101_107248 | Not Available | Negative | 3583414 - 3583887 | 17944.6 |
| phosphoglycerate kinase | SAMN04488101_107249 | Not Available | Negative | 3584088 - 3585281 | 43008.7 |
| acetyltransferase (gnat) domain-containing protein | SAMN04488101_107250 | Not Available | Negative | 3585326 - 3585757 | 15916.0 |
| glyceraldehyde 3-phosphate dehydrogenase | SAMN04488101_107251 | Not Available | Negative | 3585750 - 3586745 | 35704.8 |
| uncharacterized membrane protein | SAMN04488101_107252 | Not Available | Negative | 3586803 - 3587408 | 22207.7 |
| peptidase family m1 | SAMN04488101_107253 | Not Available | Negative | 3587510 - 3589090 | 60108.1 |
| transposase | SAMN04488101_107254 | Not Available | Positive | 3589391 - 3589699 | 11907.7 |
| transposase (or an inactivated derivative) | SAMN04488101_1081 | Not Available | Positive | 3589762 - 3590985 | 46918.3 |
| hypothetical protein | SAMN04488101_1082 | Not Available | Negative | 3591036 - 3591515 | 18561.5 |
| uncharacterized phage-associated protein | SAMN04488101_1083 | Not Available | Positive | 3591850 - 3592458 | 23360.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
