Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| imidazoleglycerol-phosphate dehydratase | SAMN04488101_10728 | Not Available | Positive | 3328363 - 3329496 | 42746.1 |
| glutamine amidotransferase | SAMN04488101_10729 | Not Available | Positive | 3329496 - 3330089 | 21765.3 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | SAMN04488101_10730 | Not Available | Positive | 3330091 - 3330840 | 27939.9 |
| cyclase | SAMN04488101_10731 | Not Available | Positive | 3330844 - 3331599 | 27119.8 |
| protein n-acetyltransferase, rimj/riml family | SAMN04488101_10732 | Not Available | Positive | 3331603 - 3332115 | 19580.7 |
| phosphoribosyl-atp pyrophosphatase /phosphoribosyl-amp cyclohydrolase | SAMN04488101_10733 | Not Available | Positive | 3332106 - 3332696 | 22350.6 |
| wd-40 repeat-containing protein | SAMN04488101_10734 | Not Available | Positive | 3332702 - 3333601 | 33809.5 |
| sh3 domain-containing protein | SAMN04488101_10735 | Not Available | Negative | 3333605 - 3334387 | 29378.7 |
| nucleotide-binding universal stress protein, uspa family | SAMN04488101_10736 | Not Available | Positive | 3334519 - 3334974 | 16431.7 |
| molecular chaperone dnaj | SAMN04488101_10737 | Not Available | Negative | 3335061 - 3336230 | 41797.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
