Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN04488101_10718 | Not Available | Negative | 3317625 - 3318164 | 19620.1 |
| hypothetical protein | SAMN04488101_10719 | Not Available | Negative | 3318175 - 3318843 | 25728.9 |
| dihydroorotase | SAMN04488101_10720 | Not Available | Negative | 3318836 - 3320107 | 45271.3 |
| n-terminal double-transmembrane domain-containing protein | SAMN04488101_10721 | Not Available | Negative | 3320104 - 3322152 | 76397.6 |
| l,d-transpeptidase catalytic domain | SAMN04488101_10722 | Not Available | Negative | 3322174 - 3323751 | 60737.3 |
| peptidase family m23 | SAMN04488101_10723 | Not Available | Negative | 3323814 - 3324815 | 36904.1 |
| hypothetical protein | SAMN04488101_10724 | Not Available | Negative | 3324835 - 3325026 | 6881.15 |
| atp phosphoribosyltransferase | SAMN04488101_10725 | Not Available | Positive | 3325030 - 3325881 | 30693.6 |
| histidinol dehydrogenase | SAMN04488101_10726 | Not Available | Positive | 3325973 - 3327265 | 46728.9 |
| histidinol phosphate aminotransferase apoenzyme | SAMN04488101_10727 | Not Available | Positive | 3327284 - 3328324 | 38784.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
