Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_106215 | Not Available | Negative | 3251708 - 3252478 | 28621.7 |
| methionine aminotransferase | SAMN04488101_106216 | Not Available | Positive | 3252545 - 3253690 | 42894.9 |
| carbon-nitrogen hydrolase | SAMN04488101_106217 | Not Available | Positive | 3253716 - 3254519 | 31141.4 |
| asparaginase | SAMN04488101_106218 | Not Available | Positive | 3254532 - 3255563 | 36923.7 |
| gtp-binding protein lepa | SAMN04488101_106219 | Not Available | Positive | 3255664 - 3257451 | 66720.0 |
| 5,10-methylenetetrahydrofolate dehydrogenase (nadp+) | SAMN04488101_106220 | Not Available | Positive | 3257497 - 3258378 | 31698.6 |
| 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit | SAMN04488101_106221 | Not Available | Negative | 3258387 - 3258770 | 14690.7 |
| organic radical activating enzyme | SAMN04488101_106222 | Not Available | Positive | 3258809 - 3259432 | 23697.3 |
| wd40-like beta propeller repeat | SAMN04488101_106223 | Not Available | Positive | 3259491 - 3261386 | 70839.5 |
| 2-dehydro-3-deoxyphosphooctonate aldolase (kdo 8-p synthase) | SAMN04488101_106224 | Not Available | Negative | 3261413 - 3262228 | 29282.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
