Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ndp-sugar epimerase, includes udp-glcnac-inverting 4,6-dehydratase flaa1 and capsular polysaccharide biosynthesis protein epsc | SAMN04488101_106205 | Not Available | Positive | 3242717 - 3244675 | 73839.8 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488101_106206 | Not Available | Positive | 3244672 - 3245790 | 43319.9 |
| hypothetical protein | SAMN04488101_106207 | Not Available | Positive | 3245948 - 3246397 | 17471.4 |
| conserved hypothetical integral membrane protein | SAMN04488101_106208 | Not Available | Negative | 3246466 - 3247722 | 45369.7 |
| hypothetical protein | SAMN04488101_106209 | Not Available | Negative | 3247832 - 3248482 | 24381.5 |
| l-glyceraldehyde 3-phosphate reductase | SAMN04488101_106210 | Not Available | Negative | 3248528 - 3249487 | 35526.5 |
| hypothetical protein | SAMN04488101_106211 | Not Available | Negative | 3249582 - 3249758 | 6442.75 |
| putative toxin-antitoxin system antitoxin component, tigr02293 family | SAMN04488101_106212 | Not Available | Positive | 3250014 - 3250472 | 16663.0 |
| res domain-containing protein | SAMN04488101_106213 | Not Available | Positive | 3250475 - 3250927 | 17113.9 |
| regulator of nucleoside diphosphate kinase | SAMN04488101_106214 | Not Available | Positive | 3251290 - 3251667 | 14130.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
