Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dtdp-4-amino-4,6-dideoxygalactose transaminase | SAMN04488101_106185 | Not Available | Positive | 3221118 - 3222374 | 46883.9 |
| sugar transferase involved in lps biosynthesis (colanic, teichoic acid) | SAMN04488101_106186 | Not Available | Positive | 3222377 - 3222979 | 23333.7 |
| hypothetical protein | SAMN04488101_106187 | Not Available | Positive | 3223002 - 3224246 | 47859.3 |
| methyltransferase domain-containing protein | SAMN04488101_106188 | Not Available | Positive | 3224265 - 3224939 | 25779.3 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488101_106189 | Not Available | Positive | 3224971 - 3226113 | 43619.6 |
| histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase | SAMN04488101_106190 | Not Available | Positive | 3226139 - 3227344 | 46287.7 |
| hypothetical protein | SAMN04488101_106191 | Not Available | Positive | 3227328 - 3227879 | 21490.1 |
| atp-grasp domain-containing protein | SAMN04488101_106192 | Not Available | Positive | 3227876 - 3228922 | 41294.5 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488101_106193 | Not Available | Positive | 3228935 - 3230011 | 40814.2 |
| asparagine synthase (glutamine-hydrolysing) | SAMN04488101_106194 | Not Available | Positive | 3230035 - 3231924 | 72169.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
