Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna gyrase subunit a | SAMN04488101_10674 | Not Available | Negative | 3105960 - 3108563 | 97431.4 |
| coproporphyrinogen oxidase | SAMN04488101_10675 | Not Available | Negative | 3108693 - 3109694 | 38292.6 |
| hypothetical protein | SAMN04488101_10676 | Not Available | Negative | 3109748 - 3109969 | 7873.78 |
| hypothetical protein | SAMN04488101_10677 | Not Available | Negative | 3110012 - 3110317 | 11580.5 |
| protein of unknown function | SAMN04488101_10678 | Not Available | Positive | 3110396 - 3110881 | 18413.5 |
| putative dna-binding domain-containing protein | SAMN04488101_10679 | Not Available | Positive | 3110901 - 3111524 | 23652.6 |
| multidrug resistance protein, mate family | SAMN04488101_10680 | Not Available | Positive | 3111654 - 3113015 | 49315.0 |
| tonb-dependent receptor plug domain | SAMN04488101_10681 | Not Available | Positive | 3113333 - 3116305 | 108495.0 |
| hypothetical protein | SAMN04488101_10682 | Not Available | Positive | 3116326 - 3117267 | 33816.3 |
| hypothetical protein | SAMN04488101_10683 | Not Available | Negative | 3117290 - 3117490 | 7626.02 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
