Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN04488101_10634 | Not Available | Negative | 3053262 - 3054626 | 50718.2 |
| methane oxygenase pmoa | SAMN04488101_10635 | Not Available | Negative | 3054660 - 3055667 | 37501.5 |
| muramoyltetrapeptide carboxypeptidase | SAMN04488101_10636 | Not Available | Positive | 3055900 - 3056919 | 37719.9 |
| exodeoxyribonuclease vii large subunit | SAMN04488101_10637 | Not Available | Positive | 3056861 - 3058288 | 53567.2 |
| exodeoxyribonuclease vii small subunit | SAMN04488101_10638 | Not Available | Positive | 3058263 - 3058472 | 7850.28 |
| nucleoside-diphosphate-sugar epimerase | SAMN04488101_10639 | Not Available | Negative | 3058480 - 3059472 | 36814.5 |
| hypothetical protein | SAMN04488101_10640 | Not Available | Negative | 3059476 - 3060594 | 42602.6 |
| serine palmitoyltransferase | SAMN04488101_10641 | Not Available | Negative | 3060675 - 3061880 | 43923.7 |
| rna recognition motif. (a.k.a. rrm, rbd, or rnp domain) | SAMN04488101_10642 | Not Available | Positive | 3062454 - 3062759 | 11099.1 |
| uncharacterized membrane protein yhhn | SAMN04488101_10643 | Not Available | Positive | 3062863 - 3063549 | 26128.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
