Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| right handed beta helix region | SAMN04488101_105243 | Not Available | Positive | 2991971 - 2993860 | 69715.1 |
| glycosyl hydrolases family 35 | SAMN04488101_105244 | Not Available | Positive | 2993946 - 2996507 | 96244.2 |
| endo-alpha-n-acetylgalactosaminidase | SAMN04488101_105245 | Not Available | Positive | 2996514 - 2999897 | 126976.0 |
| glycosyl hydrolases family 43 | SAMN04488101_105246 | Not Available | Positive | 2999942 - 3000298 | 13521.8 |
| beta-xylosidase | SAMN04488101_105247 | Not Available | Positive | 3000380 - 3001543 | 43794.7 |
| alpha-l-fucosidase | SAMN04488101_105248 | Not Available | Negative | 3001653 - 3002081 | 15957.1 |
| integrase core domain-containing protein | SAMN04488101_105249 | Not Available | Negative | 3002199 - 3002477 | 10917.2 |
| protein of unknown function | SAMN04488101_1061 | Not Available | Positive | 3002694 - 3005249 | 94378.4 |
| histidine kinase | SAMN04488101_1062 | Not Available | Negative | 3005304 - 3006392 | 42614.1 |
| two component transcriptional regulator, lyttr family | SAMN04488101_1063 | Not Available | Negative | 3006446 - 3007192 | 28194.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
