Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein beta-barrel domain-containing protein | SAMN04488101_105193 | Not Available | Positive | 2920778 - 2921602 | 31081.8 |
| abc-type fe3+/spermidine/putrescine transport systems, atpase components | SAMN04488101_105194 | Not Available | Positive | 2921631 - 2922623 | 36809.5 |
| carboxypepd_reg-like domain-containing protein | SAMN04488101_105195 | Not Available | Positive | 2922831 - 2925356 | 96855.0 |
| hypothetical protein | SAMN04488101_105196 | Not Available | Positive | 2925428 - 2925736 | 11816.3 |
| uncharacterized conserved protein ybbc, duf1343 family | SAMN04488101_105197 | Not Available | Positive | 2925743 - 2926903 | 43625.3 |
| hypothetical protein | SAMN04488101_105198 | Not Available | Negative | 2927046 - 2927462 | 15649.6 |
| l-threonine ammonia-lyase | SAMN04488101_105199 | Not Available | Negative | 2927576 - 2928823 | 45796.5 |
| 3-isopropylmalate dehydrogenase | SAMN04488101_105200 | Not Available | Negative | 2928906 - 2929964 | 38621.2 |
| d-citramalate synthase | SAMN04488101_105201 | Not Available | Negative | 2930085 - 2931581 | 55148.8 |
| 3-isopropylmalate/(r)-2-methylmalate dehydratase small subunit | SAMN04488101_105202 | Not Available | Negative | 2931698 - 2932294 | 22322.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
