Pedobacter nyackensis

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter nyackensis is a Gram-negative, rod-shaped bacterium that exhibits aerobic respiration and is non-spore-forming. Its optimal growth temperature is around 16.0 °C, indicating a preference for cooler environments, which may reflect its adaptation to specific ecological niches. As a member of the genus Pedobacter, this microbe is likely to possess traits that confer resilience in various habitats, potentially including soil and freshwater environments. The Gram-negative nature of Pedobacter nyackensis suggests that it possesses a complex cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which can influence its interactions with the surrounding environment. The aerobic requirement indicates that Pedobacter nyackensis relies on oxygen for its metabolic processes, which may position it within ecosystems where oxygen availability is sufficient, such as in well-aerated soils or water bodies. The absence of sporulation suggests that this bacterium may be less resilient to extreme conditions compared to spore-forming bacteria, potentially limiting its survival during environmental disturbances. Overall, the traits of Pedobacter nyackensis underscore its role in environments where cooler temperatures prevail and oxygen is accessible, highlighting its potential contributions to nutrient cycling and microbial diversity in these ecosystems. Further research could elucidate its specific interactions within these microbial communities and its broader ecological functions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter nyackensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter nyackensis
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter nyackensis strain DSM 19625 genome assembly, contig:

Gene Summary

Adenine Count

1845598 bp

Thymine Count

1830306 bp

Guanine Count

1224599 bp

Cytosine Count

1175798 bp

Genome Length

6077111 bp

Protein-coding Genes

4968 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
outer membrane protein beta-barrel domain-containing proteinSAMN04488101_105193Not AvailablePositive2920778 - 292160231081.8
abc-type fe3+/spermidine/putrescine transport systems, atpase componentsSAMN04488101_105194Not AvailablePositive2921631 - 292262336809.5
carboxypepd_reg-like domain-containing proteinSAMN04488101_105195Not AvailablePositive2922831 - 292535696855.0
hypothetical proteinSAMN04488101_105196Not AvailablePositive2925428 - 292573611816.3
uncharacterized conserved protein ybbc, duf1343 familySAMN04488101_105197Not AvailablePositive2925743 - 292690343625.3
hypothetical proteinSAMN04488101_105198Not AvailableNegative2927046 - 292746215649.6
l-threonine ammonia-lyaseSAMN04488101_105199Not AvailableNegative2927576 - 292882345796.5
3-isopropylmalate dehydrogenaseSAMN04488101_105200Not AvailableNegative2928906 - 292996438621.2
d-citramalate synthaseSAMN04488101_105201Not AvailableNegative2930085 - 293158155148.8
3-isopropylmalate/(r)-2-methylmalate dehydratase small subunitSAMN04488101_105202Not AvailableNegative2931698 - 293229422322.4

Displaying genes 2431 – 2440 of 5031 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.