Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-hydroxy-tetrahydrodipicolinate synthase | SAMN04488101_105163 | Not Available | Positive | 2887321 - 2888259 | 34470.3 |
| transcriptional regulator, laci family | SAMN04488101_105164 | Not Available | Positive | 2888351 - 2889427 | 39910.4 |
| bnr repeat-like domain-containing protein | SAMN04488101_105165 | Not Available | Positive | 2889915 - 2891042 | 42305.1 |
| bnr repeat-like domain-containing protein | SAMN04488101_105166 | Not Available | Positive | 2891185 - 2892345 | 43325.1 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_105167 | Not Available | Positive | 2892476 - 2895580 | 114931.0 |
| starch-binding associating with outer membrane | SAMN04488101_105168 | Not Available | Positive | 2895583 - 2897175 | 61052.4 |
| protein of unknown function | SAMN04488101_105169 | Not Available | Positive | 2897194 - 2898135 | 35053.5 |
| formylglycine-generating enzyme, required for sulfatase activity, contains sumf1/fge domain | SAMN04488101_105170 | Not Available | Positive | 2898148 - 2900169 | 75753.6 |
| glucose uptake protein | SAMN04488101_105171 | Not Available | Positive | 2900176 - 2901174 | 35660.5 |
| hypothetical protein | SAMN04488101_105172 | Not Available | Positive | 2901201 - 2901857 | 24255.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
