Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipid-a-disaccharide synthase | SAMN04488101_10593 | Not Available | Positive | 2809324 - 2810427 | 41090.1 |
| uncharacterized domain 1-containing protein | SAMN04488101_10594 | Not Available | Negative | 2810442 - 2811032 | 22026.6 |
| sodium/proton antiporter, cpa1 family | SAMN04488101_10595 | Not Available | Negative | 2811058 - 2812662 | 59945.9 |
| predicted nuclease of the rnase h fold, hicb family | SAMN04488101_10596 | Not Available | Negative | 2812765 - 2813139 | 14020.6 |
| hica toxin of toxin-antitoxin | SAMN04488101_10597 | Not Available | Negative | 2813123 - 2813383 | 10143.3 |
| Trna-tyr | Not Available | Not Available | Positive | 2813858 - 2813943 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 2813992 - 2814068 | Not Available |
| hypothetical protein | SAMN04488101_105100 | Not Available | Negative | 2814212 - 2814370 | 6149.85 |
| protein of unknown function | SAMN04488101_105101 | Not Available | Positive | 2814515 - 2814976 | 18287.7 |
| hypothetical protein | SAMN04488101_105102 | Not Available | Positive | 2814989 - 2815726 | 27407.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
