Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN04488101_10553 | Not Available | Positive | 2755958 - 2757676 | 62533.9 |
| hypothetical protein | SAMN04488101_10554 | Not Available | Positive | 2757684 - 2758883 | 45288.4 |
| fasciclin domain-containing protein | SAMN04488101_10555 | Not Available | Positive | 2758908 - 2759987 | 40391.6 |
| uncaracterized surface protein containing fasciclin (fas1) repeats | SAMN04488101_10556 | Not Available | Positive | 2759988 - 2761235 | 46478.6 |
| uncaracterized surface protein containing fasciclin (fas1) repeats | SAMN04488101_10557 | Not Available | Positive | 2761240 - 2762283 | 37874.7 |
| carboxypeptidase regulatory-like domain-containing protein | SAMN04488101_10558 | Not Available | Positive | 2762298 - 2765540 | 119154.0 |
| ipt/tig domain-containing protein | SAMN04488101_10559 | Not Available | Positive | 2765540 - 2767786 | 78234.8 |
| uncharacterized conserved protein, duf2147 family | SAMN04488101_10560 | Not Available | Positive | 2768003 - 2768485 | 18591.2 |
| outer membrane receptor proteins, mostly fe transport | SAMN04488101_10561 | Not Available | Positive | 2768571 - 2771000 | 88413.0 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_10562 | Not Available | Positive | 2771107 - 2771727 | 23966.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
