Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-l-fucosidase | SAMN04488101_10523 | Not Available | Positive | 2717744 - 2719093 | 52175.1 |
| Trna-met | Not Available | Not Available | Positive | 2719326 - 2719399 | Not Available |
| hypothetical protein | SAMN04488101_10525 | Not Available | Positive | 2719525 - 2719905 | 14910.6 |
| lipopolysaccharide export system permease protein | SAMN04488101_10526 | Not Available | Positive | 2720005 - 2721375 | 51190.1 |
| 3,4-dihydroxy-2-butanone 4-phosphate synthase | SAMN04488101_10527 | Not Available | Positive | 2721492 - 2722703 | 44043.1 |
| autotransporter translocation and assembly factor tamb | SAMN04488101_10528 | Not Available | Negative | 2722708 - 2727141 | 164929.0 |
| n6-l-threonylcarbamoyladenine synthase | SAMN04488101_10529 | Not Available | Positive | 2727235 - 2728236 | 36136.7 |
| hypothetical protein | SAMN04488101_10530 | Not Available | Positive | 2728256 - 2728477 | 8274.6 |
| recombination protein reca | SAMN04488101_10531 | Not Available | Negative | 2728544 - 2729566 | 36412.0 |
| dna-(apurinic or apyrimidinic site) lyase /endonuclease iii | SAMN04488101_10532 | Not Available | Negative | 2729675 - 2730352 | 25529.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
