Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transketolase | SAMN04488101_104152 | Not Available | Negative | 2533169 - 2534131 | 34510.3 |
| transketolase subunit a | SAMN04488101_104153 | Not Available | Negative | 2534142 - 2534969 | 30450.3 |
| l-fucose isomerase | SAMN04488101_104154 | Not Available | Negative | 2534987 - 2536393 | 51912.3 |
| transcriptional regulator, deor family | SAMN04488101_104155 | Not Available | Negative | 2536397 - 2537161 | 27710.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_104156 | Not Available | Positive | 2537697 - 2541008 | 122067.0 |
| starch-binding associating with outer membrane | SAMN04488101_104157 | Not Available | Positive | 2541074 - 2543128 | 75480.1 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_104158 | Not Available | Negative | 2543207 - 2543752 | 21089.5 |
| protein of unknown function, duf255 | SAMN04488101_104159 | Not Available | Negative | 2543844 - 2545853 | 74699.7 |
| hypothetical protein | SAMN04488101_104160 | Not Available | Negative | 2545873 - 2547429 | 58251.4 |
| protein of unknown function | SAMN04488101_104161 | Not Available | Negative | 2547459 - 2548178 | 27260.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
