Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease hi | SAMN04488101_10472 | Not Available | Negative | 2449898 - 2450362 | 17210.6 |
| Trna-his | Not Available | Not Available | Positive | 2450543 - 2450619 | Not Available |
| outer membrane receptor proteins, mostly fe transport | SAMN04488101_10474 | Not Available | Negative | 2451210 - 2453408 | 80887.2 |
| hypothetical protein | SAMN04488101_10475 | Not Available | Negative | 2453444 - 2453779 | 12321.7 |
| hypothetical protein | SAMN04488101_10476 | Not Available | Negative | 2453838 - 2454206 | 14364.7 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_10477 | Not Available | Negative | 2454203 - 2454760 | 21960.4 |
| cold-shock dna-binding protein family | SAMN04488101_10478 | Not Available | Negative | 2454889 - 2455080 | 7027.37 |
| cytochrome c | SAMN04488101_10479 | Not Available | Negative | 2455182 - 2456153 | 35319.2 |
| his kinase a (phospho-acceptor) domain-containing protein | SAMN04488101_10480 | Not Available | Positive | 2456314 - 2458566 | 85260.2 |
| dihydrofolate reductase | SAMN04488101_10481 | Not Available | Negative | 2458549 - 2459112 | 21143.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
