Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fecr family protein | SAMN04488101_103253 | Not Available | Negative | 2258334 - 2259323 | 36895.0 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_103254 | Not Available | Negative | 2259393 - 2260001 | 23598.2 |
| calcineurin-like phosphoesterase | SAMN04488101_103255 | Not Available | Negative | 2260073 - 2261194 | 41892.1 |
| predicted transcriptional regulator ydee, contains arac-type dna-binding domain | SAMN04488101_103256 | Not Available | Positive | 2261348 - 2261815 | 17294.2 |
| putative endopeptidase | SAMN04488101_103257 | Not Available | Positive | 2261860 - 2263905 | 76013.9 |
| cbs domain-containing protein | SAMN04488101_103258 | Not Available | Negative | 2263983 - 2264411 | 15814.4 |
| gh3 auxin-responsive promoter | SAMN04488101_103259 | Not Available | Negative | 2264524 - 2266032 | 58516.9 |
| lipopolysaccharide export system atp-binding protein | SAMN04488101_103260 | Not Available | Negative | 2266054 - 2266788 | 27455.4 |
| exonuclease recj | SAMN04488101_103261 | Not Available | Negative | 2266838 - 2268541 | 63299.4 |
| metallo-beta-lactamase superfamily protein | SAMN04488101_103262 | Not Available | Positive | 2268686 - 2269450 | 28855.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
