Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_103193 | Not Available | Negative | 2170632 - 2174138 | 127385.0 |
| fecr family protein | SAMN04488101_103194 | Not Available | Negative | 2174326 - 2175363 | 39141.8 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_103195 | Not Available | Negative | 2175458 - 2176054 | 23102.1 |
| copper homeostasis protein | SAMN04488101_103196 | Not Available | Positive | 2176197 - 2176952 | 27484.2 |
| two component transcriptional regulator, luxr family | SAMN04488101_103197 | Not Available | Positive | 2177456 - 2178109 | 24610.8 |
| signal transduction histidine kinase | SAMN04488101_103198 | Not Available | Negative | 2178106 - 2181063 | 112897.0 |
| gliding motility-associated c-terminal domain-containing protein | SAMN04488101_103199 | Not Available | Positive | 2181399 - 2192471 | 383904.0 |
| type ix secretion system membrane protein, porp/sprf family | SAMN04488101_103200 | Not Available | Positive | 2192540 - 2193508 | 35825.9 |
| wd40-like beta propeller repeat | SAMN04488101_103201 | Not Available | Positive | 2193513 - 2195246 | 65128.8 |
| long-chain acyl-coa synthetase | SAMN04488101_103202 | Not Available | Positive | 2195442 - 2197217 | 66292.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
