Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-glu | Not Available | Not Available | Positive | 2118678 - 2118752 | Not Available |
| 3',5'-cyclic amp phosphodiesterase cpda | SAMN04488101_103161 | Not Available | Negative | 2118902 - 2119828 | 34848.4 |
| susd family protein | SAMN04488101_103162 | Not Available | Negative | 2119831 - 2121621 | 67206.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_103163 | Not Available | Negative | 2121653 - 2124862 | 118142.0 |
| transcriptional regulator, tetr family | SAMN04488101_103164 | Not Available | Positive | 2125257 - 2125901 | 25092.6 |
| hypothetical protein | SAMN04488101_103165 | Not Available | Negative | 2125851 - 2126108 | 9459.91 |
| hypothetical protein | SAMN04488101_103166 | Not Available | Positive | 2126250 - 2126816 | 21449.3 |
| patatin-like phospholipase | SAMN04488101_103167 | Not Available | Positive | 2127016 - 2128086 | 39776.2 |
| signal transduction histidine kinase | SAMN04488101_103168 | Not Available | Positive | 2128181 - 2130661 | 94267.2 |
| two-component system, ntrc family, response regulator hydg | SAMN04488101_103169 | Not Available | Negative | 2130667 - 2131995 | 49189.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
