Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar (pentulose or hexulose) kinase | SAMN04488101_10389 | Not Available | Positive | 2039971 - 2041323 | 50578.2 |
| dna-binding transcriptional regulator, gntr family | SAMN04488101_10390 | Not Available | Positive | 2041343 - 2042374 | 39615.2 |
| outer membrane protein beta-barrel domain-containing protein | SAMN04488101_10391 | Not Available | Negative | 2042460 - 2043173 | 24818.2 |
| 1-deoxy-d-xylulose-5-phosphate synthase | SAMN04488101_10392 | Not Available | Negative | 2043396 - 2045324 | 70583.8 |
| glycine hydroxymethyltransferase | SAMN04488101_10393 | Not Available | Positive | 2045418 - 2046707 | 46668.3 |
| pas domain s-box-containing protein | SAMN04488101_10394 | Not Available | Positive | 2046708 - 2049101 | 89382.1 |
| comf family protein | SAMN04488101_10395 | Not Available | Negative | 2049394 - 2050089 | 25892.0 |
| 23s rrna m(2)a-2503 methyltransferase | SAMN04488101_10396 | Not Available | Negative | 2050137 - 2051186 | 39620.3 |
| 23s rrna pseudouridine2604 synthase | SAMN04488101_10397 | Not Available | Negative | 2051345 - 2052421 | 38675.4 |
| hypothetical protein | SAMN04488101_10398 | Not Available | Negative | 2052582 - 2052848 | 10581.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
