Jonesia denitrificans DSM 20603

Gram-positiveRodNon-motileFacultative

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Jonesiaceae

Genus

Jonesia

Description

Jonesia denitrificans CIP 55134 was isolated from boiled ox blood in about 1948. It is a Gram-positive nonspore-forming, motile rod that is catalase positive, oxidase negative, and facultatively anaerobic. It grows as irregular, nonsporing rods (0.3 by 0.5 um) showing branched Y- and clublike forms, although filamentous and coccoid cells may occur in older cultures. Its major menaquinone is MK-9 (adapted from Int. J. Syst. Bacteriol. (1987), 37:266). (HAMAP: JONDD)

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyJonesiaceae
GenusJonesia
SpeciesJonesia denitrificans
StrainDSM 20603

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceNot Available
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoorganoheterotroph
PathogenicityNo

Genome Summary

Jonesia denitrificans DSM 20603, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2459 genes

Non-Coding Genes

127 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
zinc-binding dehydrogenaseJDEN_RS10630Not AvailablePositive2308869 - 230984634056.8
alpha/beta hydrolaseJDEN_RS10635Not AvailablePositive2309788 - 231081037933.1
mth1187 family thiamine-binding proteinJDEN_RS10640Not AvailableNegative2310807 - 231110610638.7
fad-binding and (fe-s)-binding domain-containing proteinJDEN_RS10645Not AvailableNegative2311160 - 2314072103848.0
abc transporter atp-binding proteinJDEN_RS10650Not AvailablePositive2314289 - 231506827858.2
abc transporter permeaseJDEN_RS10655Not AvailablePositive2315068 - 231768989511.3
duf3806 domain-containing proteinJDEN_RS10660Not AvailablePositive2318014 - 231897034171.6
hypothetical proteinJDEN_RS10665Not AvailableNegative2318927 - 232030948400.5
rna polymerase sigma factorJDEN_RS10670Not AvailableNegative2320379 - 232092120177.3
lpxtg-motif cell wall anchor domain-containing proteinJDEN_RS13150Not AvailableNegative2321142 - 232212833560.2

Displaying genes 2221 – 2230 of 2586 in total

Metabolites

8 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00037771D-myo-inositol 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranosideC15H29N2O11SChemical structure of 1D-myo-inositol 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranosideNot available
Average445.46Da
Monoisotopic445.1486574Da
BASm00037801D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside 3-phosphateC14H24NO14PChemical structure of 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside 3-phosphateNot available
Average461.314Da
Monoisotopic461.094538615Da
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da
BASm0016750X-14847C12H23NO10Chemical structure of X-14847NULL
Average341.313Da
Monoisotopic341.132195945Da
BASm0017265Uridine diphosphate-N-acetylglucosamineC17H27N3O17P2Chemical structure of Uridine diphosphate-N-acetylglucosamine528-04-1
Average607.3537Da
Monoisotopic607.081569477Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0039828MycobacteriumNot availableNot availableNot available

Displaying 1–8 of 8 metabolites

Health Effects

No health effects information available for this bacterium.