Jonesia denitrificans DSM 20603

Gram-positiveRodNon-motileFacultative

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Jonesiaceae

Genus

Jonesia

Description

Jonesia denitrificans CIP 55134 was isolated from boiled ox blood in about 1948. It is a Gram-positive nonspore-forming, motile rod that is catalase positive, oxidase negative, and facultatively anaerobic. It grows as irregular, nonsporing rods (0.3 by 0.5 um) showing branched Y- and clublike forms, although filamentous and coccoid cells may occur in older cultures. Its major menaquinone is MK-9 (adapted from Int. J. Syst. Bacteriol. (1987), 37:266). (HAMAP: JONDD)

Taxonomy

Kingdom	Bacillati
Phylum	Actinomycetota
Class	Actinomycetes
Order	Micrococcales
Family	Jonesiaceae
Genus	Jonesia
Species	Jonesia denitrificans
Strain	DSM 20603

Profile

Physiology
Gram staining properties	Positive
Shape	Rod
Mobility	No
Flagellar presence	Not Available
Number of membranes	1

Ecology, Host, and Life Cycle
Oxygen requirements	Facultative
Optimal temperature	37
Temperature range	Mesophilic
Habitat	HostAssociated
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Nonsporulating
Energy source	Chemoorganoheterotroph
Pathogenicity	No

Genome Summary

Jonesia denitrificans DSM 20603

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2459 genes

Non-Coding Genes

127 genes

# of Chromosomes/Plasmids

1

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
hypothetical protein	JDEN_RS13705	Not Available	Positive	2329515 - 2330573	37731.7
hypothetical protein	JDEN_RS14210	Not Available	Positive	2330570 - 2330701	4753.13
hypothetical protein	JDEN_RS13885	Not Available	Positive	2330698 - 2330856	5950.96
hypothetical protein	JDEN_RS10740	Not Available	Positive	2330941 - 2331225	10284.1
Exonuclease	JDEN_RS10745	Not Available	Positive	2331215 - 2331892	25343.3
Hypothetical protein	JDEN_RS10750	Not Available	Positive	2331892 - 2332425	19200.0
Hypothetical protein	JDEN_RS10760	Not Available	Positive	2332740 - 2332991	8985.76
Ssdna binding protein	JDEN_RS10765	Not Available	Positive	2332993 - 2333406	15109.8
hypothetical protein	JDEN_RS10770	Not Available	Positive	2333524 - 2333877	13259.1
Hypothetical protein	JDEN_RS13710	Not Available	Positive	2334078 - 2334338	8991.6

Displaying genes 11 – 20 of 2586 in total

Pathways

229 pathways

2,3-Dihydroxybenzoate Biosynthesis pathway thumbnail

2,3-Dihydroxybenzoate Biosynthesis

2,3-Dihydroxybenzoate Biosynthesis

Biosynthesis of Siderophore Group Nonribosomal Peptides pathway thumbnail

Biosynthesis of Siderophore Group Nonribosomal Peptides

Biosynthesis of Siderophore Group Nonribosomal Peptides

Lipoic Acid Metabolism pathway thumbnail

Lipoic Acid Metabolism

Lipoic Acid Metabolism

Lysine Biosynthesis pathway thumbnail

Lysine Biosynthesis

Lysine Biosynthesis

Glycolysis and Pyruvate Dehydrogenase pathway thumbnail

Glycolysis and Pyruvate Dehydrogenase

Glycolysis and Pyruvate Dehydrogenase

Proline Metabolism pathway thumbnail

Proline Metabolism

Proline Metabolism

Palmitate Biosynthesis pathway thumbnail

Palmitate Biosynthesis

Palmitate Biosynthesis

tRNA Charging pathway thumbnail

Show All 229 Pathways

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
BASm0001865	diphosphateHO7P2		Not available	Average174.95Da Monoisotopic174.9213971Da
BASm0003777	1D-myo-inositol 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranosideC15H29N2O11S		Not available	Average445.46Da Monoisotopic445.1486574Da
BASm0003780	1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside 3-phosphateC14H24NO14P		Not available	Average461.314Da Monoisotopic461.094538615Da
BASm0014029	(S)-3-Hydroxyisobutyric acidC19H35N5O6Se		`26543-05-5`	Average508.489Da Monoisotopic509.175256Da
BASm0016750	X-14847C12H23NO10		`NULL`	Average341.313Da Monoisotopic341.132195945Da
BASm0017265	Uridine diphosphate-N-acetylglucosamineC17H27N3O17P2		`528-04-1`	Average607.3537Da Monoisotopic607.081569477Da
BASm0039655	Achromobacter xylosoxidans A8	Not available	Not available	Not available
BASm0039828	Mycobacterium	Not available	Not available	Not available

Displaying 1–8 of 8 metabolites

Health Effects

No health effects information available for this bacterium.