Dyadobacter fermentans DSM 18053

Gram-negativeRodNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Dyadobacter

Description

Dyadobacter fermentans DSM 18053 is a Gram-negative, rod-shaped bacterium that thrives optimally in mesophilic temperature ranges. Classified as a heterotroph, it primarily derives its energy from organic compounds. This microbe is particularly notable for its role in a variety of environments, including soil, freshwater, and as a component of the microbiota in the gastrointestinal tracts of several organisms. As a facultative anaerobe, D. fermentans can grow in both the presence and absence of oxygen, which allows it to adapt to diverse ecological niches. The Gram-negative nature of D. fermentans is characterized by its thin peptidoglycan layer and outer membrane, which contains lipopolysaccharides, contributing to its virulence and interaction with host organisms. Its rod shape aids in mobility and colonization capabilities. The mesophilic temperature preference indicates its ability to grow within moderate temperature ranges, making it suitable for various habitats, mainly those with organic matter decomposition. As a heterotroph, D. fermentans utilizes organic substrates, playing a vital role in carbon cycling and nutrient recycling within ecosystems. This metabolic versatility allows it to thrive in numerous environments. The facultative anaerobic nature means that it can switch between aerobic respiration when oxygen is available and fermentation or anaerobic respiration when it is not, enhancing its survival in diverse conditions. Dyadobacter fermentans has garnered attention for its potential biotechnological applications, particularly in wastewater treatment and bioremediation processes. Its ability to degrade complex organic compounds suggests a valuable role in environmental management and sustainability efforts. Furthermore, studies on D. fermentans can provide insights into microbial interactions within ecosystems and their implications for nutrient cycling and ecological balance.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusDyadobacter
SpeciesDyadobacter fermentans
StrainDSM 18053

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Dyadobacter fermentans DSM 18053
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Pairs
SporulationNonsporulating
Energy sourceChemoorganoheterotroph
PathogenicityNo

Genome Summary

Dyadobacter fermentans DSM 18053

Accession NumberNC_013037.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5761 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Single-strand binding proteinDFER_RS27420Not Available+6622438 - 662286615557.2
hypothetical proteinDFER_RS27425Not Available+6622878 - 66230787728.16
Dna polymerase iii beta subunitDFER_RS27430Not Available+6623111 - 662425942053.2
Dna adenine methyltransferaseDFER_RS27435Not Available+6624479 - 662533932794.1
Asch domain-containing/pua-like superfamily proteinDFER_RS27445Not Available+6625541 - 662596616278.3
Hypothetical proteinDFER_RS29380Not Available-6626188 - 662690426805.5
myg1 family proteinDFER_RS27455Not Available+6626983 - 662782531751.3
Putative hnh endonucleaseDFER_RS30980Not Available+6628461 - 662876911897.5
hypothetical proteinDFER_RS27470Not Available+6629152 - 662956214788.2
Terminase small subunitDFER_RS27480Not Available+6629810 - 663039421444.1

Displaying genes 1 – 10 of 5824 in total

Pathways

6 pathways

Metabolites

332 records
Metabolite IDMetabolite nameStructureCAS number
BASm0003296L-ribulose 5-phosphateC5H9O8PChemical structure of L-ribulose 5-phosphateNot available
Average228.094Da
Monoisotopic228.0046014Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034334-amino-4-deoxychorismateC10H10NO5Chemical structure of 4-amino-4-deoxychorismate133442-18-9
Average224.193Da
Monoisotopic224.056446006Da
BASm0003566cob(I)yrinate a,c diamideC45H61CoN6O12Chemical structure of cob(I)yrinate a,c diamideNot available
Average936.932Da
Monoisotopic936.3679466Da
BASm0003568precorrin-8XC45H60N4O14Chemical structure of precorrin-8XNot available
Average880.989Da
Monoisotopic880.4106026Da
BASm0003656N-acetyl-beta-D-muramate 6-phosphateC11H17NO11PChemical structure of N-acetyl-beta-D-muramate 6-phosphateNot available
Average370.228Da
Monoisotopic370.0555681Da
BASm00036917,8-dihydroneopterin 3'-phosphateC9H12N5O7PChemical structure of 7,8-dihydroneopterin 3'-phosphateNot available
Average333.1946Da
Monoisotopic333.047434275Da
BASm00036954-phospho-D-erythronateC4H6O8PChemical structure of 4-phospho-D-erythronateNot available
Average213.059Da
Monoisotopic212.9816749Da
BASm0003903D-glycero-D-manno-heptose 1-phosphateC7H13O10PChemical structure of D-glycero-D-manno-heptose 1-phosphateNot available
Average288.1459Da
Monoisotopic288.024633148Da
BASm0003926sirohemeC42H36FeN4O16Not available52553-42-1
Average908.611Da
Monoisotopic908.151956Da

Displaying 31–40 of 332 metabolites