Parabacteroides sp. 20_3

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides sp. 20_3 is a Gram-negative, rod-shaped bacterium that thrives in anaerobic conditions, categorizing it as an obligate anaerobe. This microbe is primarily found in the human gastrointestinal tract, where it plays a significant role in gut health and metabolism. Parabacteroides sp. 20_3 is classified as a chemoheterotroph, utilizing organic compounds for energy and growth, primarily deriving nutrients from complex polysaccharides, proteins, and other organic materials present in the diet. Being an obligate anaerobe means that Parabacteroides sp. 20_3 cannot survive in the presence of oxygen, which necessitates an environment that is oxygen-free, such as the intestines. This adaptation is crucial for its survival and function within the gut microbiome, where it contributes to the fermentation of undigested carbohydrates and the production of short-chain fatty acids, which are beneficial for host health. The rod shape of Parabacteroides sp. 20_3 aids in its mobility and colonization of gut niches, enabling it to penetrate biofilms and interact dynamically with other microbial species. As a Gram-negative organism, it possesses an outer membrane that helps resist certain antibiotics and contributes to its ecological niche within the gut. Furthermore, this microbe is being researched for its potential health benefits, including its role in modulating immune responses and its contributions to metabolic pathways that affect host health, including possible implications in obesity and metabolic syndrome. Its ability to interact with other gut bacteria also underscores its importance in maintaining the delicate balance of the human microbiome.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides sp. 20_3
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Parabacteroides sp. 20_3
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parabacteroides sp. 20_3 strain TF09-4 TF09-4.Scaf54, whole genome

Gene Summary

Adenine Count

1409362 bp

Thymine Count

1393692 bp

Guanine Count

1133622 bp

Cytosine Count

1157638 bp

Genome Length

5094618 bp

Protein-coding Genes

4129 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDXC95_15860Not AvailablePositive3791339 - 379202226019.3
lysozymeDXC95_15865Not AvailableNegative3792122 - 379264920365.1
duf3872 domain-containing proteinDXC95_15870Not AvailableNegative3792646 - 379315219222.9
dna primaseDXC95_15875Not AvailableNegative3793171 - 379404332842.2
conjugal transfer protein traoDXC95_15880Not AvailableNegative3794054 - 379462921063.3
conjugative transposon protein tranDXC95_15885Not AvailableNegative3794632 - 379561837247.1
conjugative transposon protein tramDXC95_15890Not AvailableNegative3795665 - 379704149723.9
duf3989 domain-containing proteinDXC95_15895Not AvailableNegative3797022 - 379733011739.4
conjugative transposon protein trakDXC95_15900Not AvailableNegative3797337 - 379796024030.7
conjugative transposon protein trajDXC95_15905Not AvailableNegative3798143 - 379914737205.9

Displaying genes 3081 – 3090 of 4204 in total

Metabolites

525 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da

Displaying 1–10 of 525 metabolites

Health Effects

No health effects information available for this bacterium.