Thermus parvatiensis str. RL

Kingdom

Thermotogati

Phylum

Deinococcota

Class

Deinococci

Order

Thermales

Family

Thermaceae

Genus

Thermus

Description

Taxonomy

KingdomThermotogati
PhylumDeinococcota
ClassDeinococci
OrderThermales
FamilyThermaceae
GenusThermus
SpeciesThermus parvatiensis
StrainRL

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature70
Temperature rangeNot Available
Habitathot water spring
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thermus parvatiensis strain RL chromosome, complete genome.

Gene Summary

Adenine Count

293627 bp

Thymine Count

295528 bp

Guanine Count

640498 bp

Cytosine Count

643168 bp

Genome Length

1872821 bp

Protein-coding Genes

2011 genes

Non-Coding Genes

93 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dtmp kinaseAV541_RS02730Not AvailableNegative473994 - 47459022088.0
pseudouridine synthaseAV541_RS02735Not AvailableNegative474591 - 47531825931.6
pseudouridine synthaseAV541_RS02740Not AvailablePositive475386 - 47719062766.4
duf3467 domain-containing proteinAV541_RS02745Not AvailableNegative477251 - 4775179653.63
roadblock/lc7 domain-containing proteinAV541_RS02750Not AvailableNegative477514 - 47785211766.3
roadblock/lc7 domain-containing proteinAV541_RS02755Not AvailableNegative477837 - 47817811954.7
hypothetical proteinAV541_RS02760Not AvailableNegative478166 - 47854913572.6
recombination mediator recrAV541_RS02765Not AvailableNegative478551 - 47913521180.6
ybab/ebfc family nucleoid-associated proteinAV541_RS02770Not AvailableNegative479136 - 47945311525.1
porphobilinogen synthaseAV541_RS02775Not AvailablePositive479484 - 48046435390.0

Displaying genes 601 – 610 of 2267 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

24 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034561-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamideC15H21N5O15P2Chemical structure of 1-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamideNot available
Average573.2993Da
Monoisotopic573.0509381Da
BASm00035255-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamideC15H21N5O15P2Chemical structure of 5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamideNot available
Average573.303Da
Monoisotopic573.0531333Da
BASm0003763(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphateC11H12NO6PChemical structure of (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphateNot available
Average285.1898Da
Monoisotopic285.0402236Da
BASm00049331-deoxy-11-oxopentalenateC15H19O3Chemical structure of 1-deoxy-11-oxopentalenateNot available
Average247.315Da
Monoisotopic247.1339681Da
BASm0004954neopentalenolactone DC15H19O4Chemical structure of neopentalenolactone DNot available
Average263.314Da
Monoisotopic263.128882672Da

Displaying 1–10 of 24 metabolites

Health Effects

No health effects information available for this bacterium.