Sphingobium indicum UT26S

Gram-negativeRodNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium indicum UT26S is a Gram-negative, rod-shaped bacterium that thrives in terrestrial habitats and exhibits aerobic metabolic activity. Its optimal growth temperature is approximately 28.0°C, indicating a preference for moderate environmental conditions. This microbe's Gram-negative cell wall structure is characterized by a thin peptidoglycan layer, which is typical of this group and plays a role in its interaction with the surrounding environment. The aerobic nature of Sphingobium indicum UT26S suggests that it relies on oxygen for its respiratory processes, which may influence its distribution in soil ecosystems where oxygen levels can fluctuate. The habitat preference for terrestrial environments highlights its potential role in soil microbiomes, possibly contributing to nutrient cycling or the degradation of organic matter. Understanding the traits of Sphingobium indicum UT26S can provide insights into the ecological functions of similar microorganisms within terrestrial ecosystems, emphasizing their importance in maintaining soil health and facilitating biogeochemical processes. Furthermore, the optimal growth temperature of 28.0°C positions this bacterium within a range that may be conducive to its survival in temperate climates, suggesting a resilience to environmental variations.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium indicum
StrainUT26S

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Sphingobium indicum UT26S
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature28
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium indicum UT26S plasmid pUT2, complete sequence.

Gene Summary

Adenine Count

1024 bp

Thymine Count

1082 bp

Guanine Count

1533 bp

Cytosine Count

1759 bp

Genome Length

5398 bp

Protein-coding Genes

7 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
parb/repb/spo0j family partition proteinSJA_RS00130P0CAV8Negative25771 - 2667332899.5
para family proteinSJA_RS00135P0CAV7Negative26688 - 2747028255.2
16s rrna (guanine(527)-n(7))-methyltransferase rsmgSJA_RS00140A5VA84Negative27467 - 2810823459.1
trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmgSJA_RS00145A5VA83Negative28105 - 2995566029.1
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeSJA_RS00150A5VA82Negative30014 - 3129745092.8
duf6489 family proteinSJA_RS00155Not AvailableNegative31319 - 315799323.32
dienelactone hydrolase family proteinSJA_RS00160Q43914Positive31738 - 3243625106.8
quinone oxidoreductaseSJA_RS00165P43903Positive32469 - 3341932613.1
phytanoyl-coa dioxygenase family proteinSJA_RS00170Not AvailablePositive33543 - 3456237764.4
yjbe family putative metal transport proteinSJA_RS00175O31603Negative34791 - 3551024935.2

Displaying genes 51 – 60 of 4249 in total

Metabolites

1713 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000686vanillateC8H7O4Chemical structure of vanillateNot available
Average167.1388Da
Monoisotopic167.0344337Da

Displaying 1–10 of 1713 metabolites

Health Effects

No health effects information available for this bacterium.