Opitutus terrae PB90-1

Gram-negativeCocciNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Verrucomicrobiota

Class

Opitutia

Order

Opitutales

Family

Opitutaceae

Genus

Opitutus

Description

Opitutus terrae (strain DSM 11246 / PB90-1) is a member of the Verrucomicrobia, a diverse phylum of organisms common in many terrestrial and aquatic habitats. This organism was isolated from rice paddy soil and has been detected in peat bog soil and other anoxic terrestrial environments. (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Verrucomicrobiota
Class	Opitutia
Order	Opitutales
Family	Opitutaceae
Genus	Opitutus
Species	Opitutus terrae
Strain	PB90-1

Profile

Physiology
Gram staining properties	Negative
Shape	Cocci
Mobility	No
Flagellar presence	Yes
Number of membranes	2

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Anaerobe
Optimal temperature	Not Available
Temperature range	Mesophilic
Habitat	Aquatic
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Chains - Pairs - Singles
Sporulation	Nonsporulating
Energy source	Not Available
Pathogenicity	No

Genome Summary

Opitutus terrae PB90-1, complete sequence.

NC_010571.1

Gene Summary

Adenine Count

1032492 bp

Thymine Count

1032346 bp

Guanine Count

1959905 bp

Cytosine Count

1932862 bp

Genome Length

5957605 bp

Protein-coding Genes

4621 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
dna polymerase y family protein	OTER_RS20470	Not Available	Negative	5257045 - 5258625	56733.3
hypothetical protein	OTER_RS20475	Not Available	Negative	5258871 - 5259515	23244.0
transcriptional repressor lexa	OTER_RS20480	Not Available	Negative	5259779 - 5260381	22422.2
sigma-70 family rna polymerase sigma factor	OTER_RS24550	Not Available	Negative	5260555 - 5261709	40669.0
cytochrome c biogenesis ccda family protein	OTER_RS20490	Not Available	Negative	5261706 - 5262401	23994.2
thioredoxin family protein	OTER_RS20495	Not Available	Negative	5262406 - 5262798	14498.8
pyrroline-5-carboxylate reductase family protein	OTER_RS24555	Not Available	Negative	5262805 - 5263581	27089.2
thioredoxin family protein	OTER_RS20505	Not Available	Negative	5263626 - 5263859	8311.4
permease	OTER_RS20510	Not Available	Negative	5263882 - 5265015	39744.4
arsr/smtb family transcription factor	OTER_RS20515	Not Available	Negative	5265066 - 5265407	12148.8

Displaying genes 4111 – 4120 of 4692 in total

Pathways

1406 pathways

2,3-Dihydroxybenzoate Biosynthesis

Biosynthesis of Siderophore Group Nonribosomal Peptides

Lysine Biosynthesis

Taurine Metabolism

Glycolysis and Pyruvate Dehydrogenase

Ornithine Metabolism

Palmitate Biosynthesis

Fatty Acid Elongation (Saturated)

Show All 1406 Pathways

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000250	2,5-didehydro-D-gluconateC6H7O7	`53736-12-2`	Average191.1156Da Monoisotopic191.019177578Da
BASm0000253	2-oxopent-4-enoateC5H5O3	Not available	Average113.093Da Monoisotopic113.024417601Da
BASm0000260	3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5	Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000274	aldehydo-D-galacturonateC6H9O7	Not available	Average193.132Da Monoisotopic193.0353762Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6	Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000503	L-rhamnoseC6H12O5	`3615-41-6`	Average164.1565Da Monoisotopic164.0684735Da
BASm0000516	6-deoxyerythronolide BC21H38O6	Not available	Average386.5228Da Monoisotopic386.2668389Da
BASm0000553	biphenyl-2,3-diolC12H10O2	Not available	Average186.2066Da Monoisotopic186.0680796Da
BASm0000592	(S)-1-phenylethanolC8H10O	Not available	Average122.1644Da Monoisotopic122.0731649Da
BASm0000989	GlycerolC3H8O3	`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da

Displaying 1–10 of 1715 metabolites

Health Effects

No health effects information available for this bacterium.